Analisis Filogenetik Familia Ikan Kerapu Serranidae Berdasarkan Penandaan Chytocrome Oxydase I (COI) dari Pasar Ikan Lokal di Indonesia
DOI:
https://doi.org/10.31957/jbp.1471Abstract
This research aims to explain the kinship or phylogeny of grouper fish of the Serranidae family based on Cytochrome Oxidase I (COI). Analysis based on previous research obtained type of grouper fish inhabiting Indonesian waters. A total of 39 grouper fish were collected from local fishermen. January-April 2014. Lombok (n=12 samples) in January, Karimunjawa (n=11) in May, Lampung (n=4) in February, Kendari (n=3) in January, Madura (n=3) in April, Tanakeke (n=3) in February, and Numfor (n=3) in May. From the results of the analysis using MEGA X software obtained the level of kinship between species tested very closely, among others species Epinephelus areolatus, E. merra, E. fasciatus, E. longispines, E. coioides, E. ongus, and E. coeruleopunctatus. The genetic average distance of all species is 0.02. In general, the association of species found is that several species are found in the same location with almost the same morphology and food. Â
Key words: phylogenetic analysis; Serranidae family; grouper fish; COI markers.
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Abdullah, A., H. A. Sativa, T. Nurhayati, dan M. Nurilmala. 2019. Pemanfaatan DNA barcoding untuk ketertelusuran label berbagai produk olahan ikan berbasis surimi komersial. Jphpi. 22: 508–519.
Akbar, N., M. Aris, M. Irfan, I. Tahir, dan A. Baksir. 2018. Kajian filogenetik ikan tuna (Thunnus spp) sebagai data pengelolaan di perairan sekitar Kepulauan Maluku, Indonesia. Jurnal Kelautan: Indonesian Journal of Marine Science and Technology. 11(2): 120. https://doi.org/10.21107/jk.v11i2.3459.
Anafarida, O. 2020. Analisis filogenetik mangga (Mangifera spp.) berdasarkan gen 5,8S rRNA Olivia anafarida dan Badruzsaufari. 45: 120–126.
Aqil, M., I. Nur, L.O.B. Abidin, dan Megawati. 2019. Deteksi megalocytivirus pada ikan kerapu budidaya di Sulawesi Tenggara menggunakan metode polymerase chain reaction berdasarkan gen major capsid protein. Media Akuatika. 4(2): 61–67.
Ariyanti, Y., and A. Farajallah. 2019. Species confirmation of juvenile cloudy grouper, Epinephelus erythrurus (Valenciennes, 1828), based on a morphologic analysis and partial co1 gene sequencing. Biodiversitas. 20(3): 914–921. https://doi.org/10.13057/biodiv/d200341
Astuti, R., Yonvitner, dan M. Kamal. 2017. Kajian stok ikan kerapu. Journal of Chemical Information and Modeling. 8(9): 1–58.
Astuti, Rika, Yonvitner, dan M.M. Kamal. 2016. Struktur komunitas ikan kerapu (Serranidae) yang didaratkan di Kecamatan Peukan Bada, Provinsi Aceh. Jurnal Ilmu dan Teknologi Kelautan Tropis. 8(1): 73–84.
Aznardi, H.M.S. 2020. Identification of grouper (Epinephelus sp ) at Muara. 48: 1–6.
Bulanin, U., M. Masrizal, and Z.A. Muchlisin. 2017. Length-weight relationships and condition factors of the whitespotted grouper Epinephelus coeruleopunctatus in the coastal waters of Padang City, Indonesia. Aceh Journal of Animal Science. 2(1): 23–27. https://doi.org/10.13170/ajas.2.1.6570.
Huang, L., W. Qi, Y. Zuo, S.A. Alias, and W. Xu. 2020. The immune response of a warm water fish orange-spotted grouper (Epinephelus coioides) infected with a typical cold water bacterial pathogen Aeromonas salmonicida is ahr dependent. Developmental and Comparative Immunology, 113: 103779. https://doi.org/10.1016/ j.dci.2020.103779.
Imtiaz, A., S.A.M. Nor, and Md. D. Naim. 2017. Progress and potential of DNA barcoding for species identification of fish species. Biodiversitas. 18(4): 1394–1405. https://doi.org/10.13057/biodiv/d180415
Jefri, E., N.P. Zamani, B. Subhan. And H.H. Madduppa. 2015. Molecular phylogeny inferred from mitochondrial DNA of the grouper Epinephelus spp. in Indonesia collected from local fish market. Biodiversitas. 16(2): 254–263. https://doi.org/10.13057/biodiv/d160221
Kamal, M.M., A.A. Hakim, N.A. Butet, Y. Fitrianingsih, dan R. Astuti. 2019. Autentikasi spesies ikan kerapu berdasarkan marka gen Mt-COI dari perairan Peukan Bada, Aceh. Jurnal Biologi Tropis. 19(2): 116. https://doi.org/10.29303/jbt.v19i2.1245.
Lin, Y.J., R.H. Roa-Ureta, L. Rabaoui, E.M. Grandcourt, R.H. Maneja, K. Al-Abdulkader, and M.A. Qurban. 2019. Association to vegetated habitats and different vulnerability to habitat degradation for two fish species, Epinephelus areolatus (Serranidae) and Siganus canaliculatus (Siganidae), from the Western Arabian Gulf. Marine Pollution Bulletin. 141: 482–492.
Malabarba, L.R., and M.C. Malabarba. 2019. Phylogeny and classification of neotropical fish. In Biology and physiology of freshwater neotropical fish. Elsevier Inc. https://doi.org/10.1016/B978-0-12-815872-2.00001-4.
Monalisa, E., F.R. Mantiri, dan H.J. Lengkong. 2019. Kajian variasi sekuens interspesies dan filogeni kelelawar Pteropus sp. menggunakan gen COI. Jurnal MIPA. 8(2): 71. https://doi.org/10.35799/jmuo.8.2.2019.24277.
Mujiyanto, R.A., S. Balai, P. Pemulihan, D. Konservasi, dan S/ Ikan. 2015. Karakteristik habitat ikan kerapu di Kepulauan Karimunjawa, Jawa Tengah. Bawal Cilalawi. 7(1): 147–154.
Ngurah, I.G., K. Mahardika, dan I.N. Wandia. 2015. Keragaman spesies ikan tuna di pasar ikan Kedonganan Bali dengan analisis sekuen kontrol daerah mitokondria DNA Jurnal Veteriner. 16(3): 416–422.
Rahim, Z., dan H. Madduppa. 2020. Identifikasi ikan sardin komersial (Dussumieria elopsoides) yang didaratkan di Pasar Muara Angke, Jakarta menggunakan pengamatan morfologi, morfometrik dan DNA barcoding. Jurnal Kelautan: Indonesian Journal of Marine Science and Technology. 13(2): 93–99.
Ramadhani, A., Z.A. Muchlisin, M.A. Sarong, dan A.S. Batubara. 2017. Hubungan panjang berat dan faktor kondisi ikan kerapu Famili Serranidae yang tertangkap di Perairan Pulo Aceh Kabupaten Aceh Besar, Provinsi Aceh. Depik. 6(2): 112–121. https://doi.org/10.13170/ depik.6.2.7017.
Sasongko, A.S., S. Anggoro, dan M. Yusuf. 2013. Kretek perairan Ujung Negoro Kabupaten Batang. Magister Ilmu Kelautan-UNDIP, Tembalang, Semarang Jawa Tengah.
Setiawan, H., A. Fahrudin, dan M.M. Kamal. 2019. Analisis hubungan panjang berat pada ikan Hermaphrodit: kerapu sunu (Plectropomus leopardus) dan kerapu macan (Epinephelus fuscoguttatus). Jurnal Biologi Tropis. 19(2): 124. https://doi.org/10.29303/jbt.v19i2.1162.
Sulistyowati, B. I., M. Kamal, Yonvitner, dan I. Yulianto. 2018. Penilaian kelompok ikan kerapu dengan pendekatan pengelolaan perikanan berbasis ekosistem di Taman Nasional Karimunjawa. Coastal and Ocean Journal. 1(3): 41–56.
Wirdateti, E. Indriana, dan Handayani. 2016. Analisis sekuen DNA mitokondria cytochrome oxidase I (COI) mtDNA pada Kukang Indonesia (Nycticebus spp) sebagai penanda guna pengembangan identifikasi spesies. Jurnal Biologi Indonesia. 12(1): 119–128.
Yusman, M.D., M. Nurilmala, N. Nurjanah, and H. Maduppa. 2016. Molecular characteristics of cytochrome B for mackerel barcoding. Jurnal Pengolahan Hasil Perikanan Indonesia. 19(1): 9–16.